Tutorials

This section is meant to be a running list of case studies and work based on this workflow, with short summaries of key lessons from each. These case studies with increasing complexity to demonstrate both the end-to-end simulation work flow.

Case Studies

1. Bulk water: Nearly incompressible liquids

For example coarse graining, see this pure water page.

2. Dodecane: Understanding bonding

For example coarse graining, see this dodecane page.

3. Methanol-Water: Mixtures

For example coarse graining, see this methanol-water mixture page.

4. NaCl Solution: Incorporating electrostatics

For example coarse graining, see this NaCl page.

5. SDS: Microstructure forming systems

For example coarse graining, see this SDS page.

6. PEO: Temperature dependence and phase separation

For example coarse graining, see this PEO page.

7. Polyelectrolyte Systems: Coacervation

For a sample system, see this page studying polyacrylic acid (PAA) and poly-allyl-amine (PAH).

8. Biological peptide systems